ProfessorMarina Kennerson

Managerial Affiliate

Faculty of Medicine and Health

Research projects & supervision summary

Summary of opportunity

Hereditary neuropathies still leave too many families without answers—but the next breakthroughs are hiding in the non-coding “dark genome.” Projects offered will use integrated WGS and RNA, long-read, and transcriptome-led discovery to uncover the missing genetic causes of unsolved axonal HN and fast-track new mechanisms toward precision therapies.

 

Opportunity Synopsis

Hereditary Neuropathies (HN) are a genetically heterogeneous group of disorders caused by the progressive degeneration of peripheral nerves. Onset typically leads to lifelong disability, characterized by muscle weakness, numbness, and chronic pain, all of which significantly impair daily function and quality of life for patients. There is currently no cure, and the development of effective therapies remains a critical unmet need. Our research program to study HN genetics is shifting beyond panels and exomes to investigate the non-coding “dark genome” with integrated WGS, long-read, repeat-expansion, and transcriptome-led approaches. This is uncovering previously hidden causes including complex SVs, repeats, regulatory and isoform disruption, particularly in unsolved axonal HN, creating exciting higher degree opportunities to close the diagnostic gap and translate new mechanisms into precision therapies.

 

Currently Supervising: PhD (2 Primary); Hons (1 Primary); International Internship ( 1 Primary)

Completed: PhD (4 Primary, 3 Auxiliary); MPhil (4 Primary, 3 Auxiliary); MSc Med (3 Auxiliary); Hons (7 Primary, 2 Auxiliary); PhD external (3 Auxiliary); MSc external (1 Auxiliary); International Internship ( 9 Primary).

 

 

Project Opportunities

Title: Mapping genes for nerve disease

Summary of opportunity:

Our laboratory has an exemplary track record for mapping genes for inherited peripheral neuropathies. Charcot-Marie-Tooth (CMT) neuropathy is a degenerative disorder of the peripheral nerve affecting both the sensory and motor neurons. It is the most common disorder presenting in neurogenetic clinics with one in 2500 people affected. Neurons are the longest cells in the body and degeneration at their ends (axonal degeneration) is a common feature in many neurodegenerative disorders. Distal peripheral neuropathies exemplify this problem. Because of the chronic nature of these disorders the hereditary neuropathies are a poorly recognised and silent health burden with a lifetime cost to Australian measured in billions of dollars.  Mapping genes for peripheral neuropathies provides an opportunity to understand of the mechanisms involved in axonal degeneration and important molecules required for peripheral nerve development and function.

Opportunity synopsis:

Discovering Genes for Charcot Marie Tooth Neuropathy using Next Generation Sequencing  A project is available to discover genes causing dominant Charcot-Marie-Tooth neuropathy. Charcot-Marie-Tooth (CMT) neuropathy is a group of degenerative disorders of the peripheral nerve affecting both motor and sensory neurons. This clinically and genetically heterogeneous syndrome is the most commonly inherited neuromuscular disorder affecting 1 in 2,500 of people. The CMT phenotype is characterised with distal muscle wasting and weakness and pes cavus or foot drop. Sensory symptoms are not always present but may include numbness, pins and needles, loss of balance, and insensitivity to temperature and pain. In rare subtypes the disease is progressive and fatal. This project will focus on gene discovery for autosomal dominant forms of the disease (CMT1 and CMT2). Although there have been significant advances, there are still approximately 10% of CMT1 and 70% of CMT2 genes to be identified.  The advancement in sequencing technologies is providing affordable tools to identify gene mutations in families too small for traditional positional cloning approaches and heralds an exciting future for gene discovery in CMT research.


Current Projects:

 

Theme 1
Despite the success of identifying over 130 genes causing hereditary neuropathies, 30-40 % of families remain without a genetic diagnosis. Many of these families have been excluded for genome wide coding disease causing variants which leaves the non-coding “dark genome” as the discovery search space for these families. Projects are available as part of an integrated gene discovery program that unites classical gene mapping with state-of-the-art long-read whole-genome and transcriptome sequencing, leveraging multi-omics data and transcriptome-guided analysis to uncover and prioritise the full spectrum of non-coding variation and solve previously unsolved families. Our goal is to identify the precise genetic cause of disease in affected individuals and families, and translate that knowledge into biological, clinical, and therapeutic impact. PhD, Masters and Honours projects are offered.
 
Theme 2
Professor Kennerson’s team has mapped and identified numerous hereditary neuropathy genes including ATP7A, PDK3, MORC2 and disease structural variants causing CMTX3 and DHMN1. To complement the gene discovery program projects are available to build directly on novel discoveries that define disease mechanisms and establish robust pre-clinical models. Students will have the opportunity to integrate patient-derived stem cell platforms with complementary in vivo models, including C. elegans and zebrafish, to interrogate gene function, pathogenic pathways, and genotype–phenotype relationships. This translational framework provides rigorous, hands-on training while generating mechanistic insight and scalable models for therapeutic discovery. PhD and Masters projects are offered.
 
 

RESEARCH PROJECTS & ACTIVITIES

  • RESEARCH-BASED DEGREE SUPERVISION
    Examining gap junction beta 1 gene dysregulation in X-linked Charcot-Marie-Tooth neuropathy
  • RESEARCH-BASED DEGREE SUPERVISION
    HECT E3 Ubiquitin Ligases and Their Role in Axonal Degeneration
  • RESEARCH-BASED DEGREE SUPERVISION
    Investigating an Axonal Form of Charcot-Marie-Tooth Neuropathy Using Combined Transcriptomic and Genomic Analysis
  • RESEARCH-BASED DEGREE SUPERVISION
    Investigating mechanisms of the CMTX3 insertion using induced pluripotent stem cell (iPSC) derived motor neurons
  • RESEARCH-BASED DEGREE SUPERVISION
    Modelling Age-Dependant Molecular Drivers of Motor Neuron Degeneration in Amyotrophic Lateral Sclerosis
  • RESEARCH-BASED DEGREE SUPERVISION
    Molecular Genetics of Distal Hereditary Motor Neuropathies: Modelling the DHMN1 Complex Insertion
  • RESEARCH-BASED DEGREE SUPERVISION
    Solving the unsolvable – advanced genomics for inherited neurologic disorders
  • RESEARCH-BASED DEGREE SUPERVISION
    The Development of Artificial microRNAs (amiRs) to Target Multiple Oncogenes in Malignant Pleural Mesothelioma (MPM)
  • RESEARCH-BASED DEGREE SUPERVISION
    The Role of ATP7A and Copper Transport in X-linked Distal Hereditary Motor Neuropathy (DHMNX)
  • RESEARCH-BASED DEGREE SUPERVISION
    Unraveling The Pathogenic Molecular Mechanisms of Morc2 Mutations Causing Charcot-Marie-Tooth Type 2Z